JCR Publications – Soil Evolution Ecology

Publications

2023

JIMÉNEZ-GARCÍA, E.; ANDÚJAR, C.; LÓPEZ, H. & EMERSON, B.C.

Towards understanding insect species introduction and establishment: A community-level barcoding approach using island beetles.

Molecular Ecology

32: 3778-3792

Link

EMERSON, B.C.; BORGES, P.A.V.; CARDOSO, P.; CONVEY, P.; DEWAARD, J.R.; ECONOMO, E.P.; GILLESPIE, R.G.; KENNEDY, S.; KREHENWINKEL, H.; MEIER, R.; RODERICK, G.K.; STRASBERG, D.; THÉBAUD, C.; TRAVESET, A.; CREEDY, T.J.; MERAMVELIOTAKIS, E.; NOGUERALES, V.; OVERCAST, I.; MORLON, H.; PAPADOPOULOU, A.; VOGLER, A.P.; ARRIBAS, P.* & ANDÚJAR, C.*

Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands.

Molecular Ecology

32: 6161-6176

Link

*equal contribution

OVERCAST, I.; NOGUERALES, V.; MERAMVELIOTAKIS, E.; ANDÚJAR, C.; ARRIBAS, P.; CREEDY, T.J.; EMERSON, B.C.; VOGLER, A.P.; PAPADOPOULOU, A. & MORLON, H.

Inferring the ecological and evolutionary determinants of community genetic diversity.

Molecular Ecology

32: 6093-6109

Link

OVERCAST, I.; ACHAZ, G.; AGUILÉE, R.; ANDÚJAR, C.; ARRIBAS, P.; CREEDY, T.J.; ECONOMO, E.P.; ETIENNE, R.; GILLESPIE, R.; JACQUET, C.; JAY, F. KENNEDY, S.; KREHENWINKEL, H.; PEREZ-LAMARQUE, B.; LAMBERT, A.; MERAMVELIOTAKIS, E.; NOGUERALES, V.; RODERICK, G.; ROGERS, H.; RUFFLEY, M.; SANMARTIN, I.; VOGLER, A.P.; PAPADOPOULOU, A.; EMERSON, B.C. & MORLON, H.

Towards a genetic theory of island biogeography: Inferring processes from multidimensional community-scale data.

Global Ecology and Biogeography

32:4-23

Link

SUÁREZ, D.; ARRIBAS, P.; MACIAS-HERNÁNDEZ, N. & EMERSON, B.C.

Dispersal ability and niche breadth influence interspecific variation in spider abundance and occupancy.

Royal Society Open Science

10: 230051

Link

NOGUERALES, V.; MERAMVELIOTAKIS, E.; CASTRO-INSUA, A.; ANDÚJAR, C.; ARRIBAS, P.; CREEDY, T.J.; OVERCAST, I.; MORLON, H.; EMERSON, B.C.; VOGLER, A.P. & PAPADOPOULOU, A.

Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests.

Molecular Ecology

32: 6110-6128

Link

ARJONA, Y.; ARRIBAS, P.; SALCES-CASTELLANO, A.; LÓPEZ, H.; EMERSON, B.C. & ANDÚJAR, C.

Metabarcoding for biodiversity inventory blind spots: a test case using the beetle fauna of an insular cloud forest

Molecular Ecology

2: 6130-6146

Link

THEISSINGER, K.; FERNANDES, C.; FORMENTI, G.; […]; THE ERGA CONSORTIUM [ARRIBAS, P.]

How genomics can help biodiversity conservation.

Trends in Genetics

39: 545-559

Link

2022

ANDÚJAR, C.; ARRIBAS, P.; LÓPEZ, H.; ARJONA, Y.; PÉREZ-DELGADO, A.; OROMÍ, P.; VOGLER, A.P. & EMERSON, B.C.

Community assembly and metaphylogeography of soil biodiversity: insights from haplotype-level community DNA metabarcoding within an oceanic island.

Molecular Ecology

1: 4078-4094

Link

SUÁREZ, D.; ARRIBAS, P.; JIMÉNEZ-GARCÍA, E. & EMERSON, B.C.

Dispersal ability and its consequences for population genetic differenciation and diversification.

Proceedings of the Royal Society B.

289, 20220489

Link

PÉREZ-DELGADO, A.; ARRIBAS, P.; HERNÁNDO, C.; LÓPEZ, H.; ARJONA, Y.; SUÁREZ, D.; EMERSON, B.C. & ANDÚJAR, C.

Hidden island endemic species, and their implications for cryptic speciation within soil arthropods.

Journal of Biogeography

49: 1367-1380

Link

ARRIBAS, P.; ANDÚJAR, C.; BOHMANN, K.; DEWAARD, J.R.; ECONOMO, E.P.; ELBRECHT, V.; GEISEN, S.; GOBERNA, M.; KREHENWINKEL, H.; NOVOTNY, V.; ZINGER, L.; CREEDY, T.J.; MERAMVELIOTAKIS, E.; NOGUERALES, V.; OVERCAST, I.; MORLON, H.; PAPADOPOULOU, A.; VOGLER, A.P. & EMERSON B.C.

Toward global integration of biodiversity big data: a harmonised metabarcode data generation module for terrestrial arthropods.

GigaScience

11: giac065

Link

FORMENTI, G.; THEISSINGER, K.; FERNANDES, C.; BISTA, I.; BOMBARELY, A., BLEIDORN, C.; […]; ARRIBAS, P.; […] & ZAMMIT, G.

The era of reference genomes in conservation genomics.

Trends in Ecology and Evolution

37: 3

Link

CREEDY, T.J.; ANDÚJAR, C.; MERAMVELIOTAKIS, E.; NOGUERALES, V.; OVERCAST, I.; PAPADOPOULOU, A.; MORLON, H.; VOGLER, A.P.; EMERSON, B.C. & ARRIBAS, P.

Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation.

Molecular Ecology

22: 847-861

Link

2021

GARCÍA, R., ANDÚJAR, C., OROMÍ, P., EMERSON, B.C., LÓPEZ, H.

Three new subterranean species of Baezia (Curculionidae: Molytinae) for the Canary Islands.

Subterranean Biology

38: 1-18

Link

ANDÚJAR, C., GREBENNIKOV, V.

Endogean beetles (Coleoptera) of Madagascar: deep soil sampling and illustrated overview.

Zootaxa

4963: 317-334

Link

HERNANDO, C., ANDÚJAR, C.

Mitogenomic phylogenetics of Diochus occultus n. sp., a palaeoendemic endogean species within the tribe Diochini (Coleoptera: Staphylinidae: Staphylininae).

Journal of Zoological Systematics and Evolutionary Research

59 (1), 78-93

Link

ALONSO, P.; PARGA-DANS, E.; ARRIBAS, P.; PÉREZ, O.; ZUMBADO, M.L.; HERNÁNDEZ, M.M.; RODRÍGUEZ-HERNÁNDEZ, A. & ANDÚJAR, C.

Elemental composition, rare earths and minority elements in organic and conventional wines from volcanic areas: The Canary Islands (Spain).

PLoS ONE

16: e0258739

Link

GÁLVEZ-REYES, N.; ARRIBAS, P.; ANDÚJAR, C.; EMERSON, B.C.; PIÑERO, D. & MASTRETA-YANES, A.

Local-scale dispersal constraints promote spatial structure and arthropod diversity within a tropical sky-island.

Molecular Ecology

30: 48-61

Link

SALCES-CASTELLANO, A.; ANDÚJAR, C.; LÓPEZ, H.; PÉREZ-DELGADO, A.; ARRIBAS, P.* & EMERSON, B.C.*

Flightlessness in insects enhances diversification and determines assemblage structure across whole communities.

Proceedings of the Royal Society B

288: 20202646

Link

*equal contribution

ANDÚJAR, C.; CREEDY, T.J.; ARRIBAS, P.; LÓPEZ H.; SALCES-CASTELLANO, A.; PÉREZ-DELGADO, A., VOGLER, A.P. & EMERSON, B.C.

Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data.

Molecular Ecology Resources

21: 1772-1787

Link

*Perspective on our paper published in same Molecular Ecology Resources issue*
*Highlighted as a From the cover article*

ARRIBAS, P.; ANDÚJAR, C.; BIDARTONDO, M.I.; BOHMANN, K.; COISSAC, E.; CREER, S.; DEWAARD, J.R.; ELBRECHT, V.; FICETOLA, G.F.; GOBERNA, M.; KENNEDY, S.; KREHENWINKEL, H.; LEESE, F,; NOVOTNY, V.; RONQUIST, F.; YU, D.W.; ZINGER, L.; CREEDY, T.J.; MERAMVELIOTAKIS, E.; NOGUERALES, V.; OVERCAST, I.; MORLON, H.; VOGLER, A.P.; PAPADOPOULOU, A. & EMERSON B.C.

Connecting high-throughput biodiversity inventories – opportunities for a site-based genomic framework for global integration and synthesis.

Molecular Ecology

30: 1120-1135

Link

SALCES-CASTELLANO, A.; STANKOWSKI, S.; ARRIBAS, P.; PATIÑO, J.; KARGER, D.N.; BUTLIN, R. & EMERSON, B.C.

Long-term cloud forest response to climate warming revealed by insect speciation.

Evolution

75: 231-244

Link

ARRIBAS, P.; ANDÚJAR, C.; SALCES-CASTELLANO, A.; EMERSON, B.C. & VOGLER, A.P.

The limited spatial scale of dispersal in soil arthropods revealed with whole-community haplotype-level metabarcoding.

Molecular Ecology

30: 48-61

Link

2020

GARCÍA, R., ANDÚJAR, C., OROMÍ, P., LÓPEZ, H.

Oromia orahan (Curculionidae, Molytinae), a new subterranean species for the Canarian underground biodiversity.

Subterranean Biology

35, 1-14

Link

VILLASTRIGO, A.; ARRIBAS, P. & RIBERA, I.

Irreversible habitat specialization does not constraint diversification in hypersaline water beetles.

Molecular Ecology

29: 3637-3648

Link

WATERS, J.; EMERSON, B.C. ARRIBAS, P. & McCULLOCH, G.

Dispersal reduction: causes, genomic mechanisms, and evolutionary consequences.

Trends in Ecology and Evolution

35: 512-522

Link

ARRIBAS, P.; ANDÚJAR, C.; MORAZA, M.L.; LINARD, B.; EMERSON, B.C. & VOGLER, A.P.

Mitochondrial metagenomics reveals the ancient origin and phylodiversity of soil mites and provides a phylogeny for the Acari.

Molecular Biology and Evolution

37: 683–694

Link

SALCES-CASTELLANO, A.; PATIÑO, J.; ALVAREZ, N.; ANDÚJAR, C.; ARRIBAS, P.; BRAOJOS-RUIZ, J.J.; del ARCO-AGUILAR, M.; GARCÍA-OLIVARES, V.; KARGER, D.; LÓPEZ, H.; MANOLOPOULOU, I.; OROMÍ, P.; PÉREZ-DELGADO, A.J.; PETERMAN, W.E.; FIJSKIJK, K.F. & EMERSON, B.C.

Microclimate drives community-wide speciation on an oceanic island.

Ecology Letters

23: 305-315

Link

CREEDY, T.; NORMAN, H.; TANG, C.; QUING CHIN, K.; ANDÚJAR, C.; ARRIBAS, P.; O’CONNOR, R.; CARVELL, C.; NOTTON, D. & VOGLER, A.P.

A validated workflow for rapid taxonomic assignment and monitoring of a national fauna of bees (Apiformes) using high throughput barcoding.

Molecular Ecology Resources

20: 40-53

Link

2019

ANDÚJAR, C., RUIZ, C., SERRANO, J.

Phylogenetic inferences on West Mediterranean Ditomina (Coleoptera, Carabidae, Harpalini) based on molecular data.

Arthropod Systematics & Phylogeny.

77: 205 - 214

Link

GARCÍA, R.*, ANDÚJAR, C.*, OROMÍ, P., EMERSON, B.C., LÓPEZ, H.

The discovery of Barretonus (Curculionidae, Cossoninae) in the Canary Islands, barcoding, morphology and description of new species.

Acta Entomologica Musei Nationalis Pragae

59: 443 - 452

Link

*equal contribution

NIE, R., ANDÚJAR, C., GÓMEZ-RODRÍGUEZ, C., BAI, M.., XUE, H.J., TANG, M., YANG, C.T., TANG, P., YANG, X-K., VOGLER, A.P.

The phylogeny of leaf beetles (Chrysomelidae) inferred from mitochondrial genomes.

Systematic Entomology

45 (1), 188-204

Link

EMERSON, B.C.; SALCES-CASTELLANO, A. & ARRIBAS, P.

Dispersal limitation: evolutionary origins and consequences in arthropods.

Molecular Ecology

28: 3137-3140

Link

ANDÚJAR, C.; ARRIBAS, P.; MOTYKA, M.; BOCEK, M.; BOCAK, L.; LINARD, B. & VOGLER, A.P.

New mitochondrial genomes of thirty-nine soil dwelling Coleoptera from metagenome sequencing.

Mitochondrial DNA Part B

4: 2447-2450

Link

GUTIÉRREZ-CÁNOVAS, C.; ARRIBAS, P.; NASELLI-FLORES, L.; BENNAS, N.; FINOCCHIARO, M.; MILLÁN, A. & VELASCO, J.

Evaluating anthropogenic impacts on naturally stressed ecosystems: Revisiting river classifications and biomonitoring metrics along salinity gradients.

Science of The Total Environment

658: 912-921

Link

2018

KUSY, D., MOTYKA, M., ANDÚJAR, C., BOCEK, M., MASEK, M., SKLENAROVA, K., GALUSZKA, P., BOCAKOVA, M., VOGLER, A.P. & BOCAK, L.

Genome sequencing of Rhinorhipus exposes an early branch of the Coleoptera.

Frontiers in Zoology

15: 21

Link

PÉREZ-GONZÁLEZ, S., ANDÚJAR, C., LANTERO, E. & ZABALLOS, J. P.

On the verge of below-ground speciation: a new species complex of microendemic endogean carabid beetles, Typhlocharis Dieck, 1869 (Coleoptera: Carabidae: Anillini), from south-west Iberian Peninsula.

Arthropod Systematics & Phylogeny

76: 429-447

Link

PÉREZ-GONZÁLEZ, S., ANDÚJAR, C., & ZABALLOS, J. P.

Hidden biodiversity: Total evidence phylogenetics and evolution of morphological traits in a highly diverse lineage of endogean ground beetles, Typhlocharis Dieck, 1869 (Carabidae, Trechinae, Anillini).

Cladistics

34: 359-383

Link

ARRIBAS, P.; GUTIÉRREZ-CÁNOVAS, C.; BOTELLA-CRUZ, M.; CAÑEDO-ARGÜELLES, M.; CARBONELL, J.A.; MILLÁN, A.; PALLARÉS, S.; VELASCO, J. & SÁNCHEZ-FERNÁNDEZ, D.

Insect communities in saline waters consist of realized but not fundamental niche specialists.

Philosophical Transactions of the Royal Society B

374: 20180008

Link

VELASCO, J.; GUTIÉRREZ-CÁNOVAS, C.; BOTELLA-CRUZ, M.; SÁNCHEZ-FERNÁNDEZ, D.; ARRIBAS, P.; CARBONELL, J.A.; MILLÁN, A. & PALLARÉS, S.

Effects of salinity changes on aquatic organisms in a multiple stressor context.

Philosophical Transactions of the Royal Society B

374: 20180011

Link

ANDÚJAR, C.; ARRIBAS, P.; YU, D.W.; VOGLER, A.P. & EMERSON B.C.

Why the COI barcode should be the community DNA metabarcode for the metazoa.

Molecular Ecology

27: 3968-3975

Link

LINARD, B.; CRAMPTON-PLATT, A.; MORINIERE, J.; TIMMERMANS, M.J.; ANDÚJAR, C.; ARRIBAS, P.; MILLER, K.; LIPECKI, J.; FAVREAU, E.; GÓMEZ-RODRÍGUEZ, C.; BARTON, C.; NIE, R.E.; GILLET, C.P.D.T.; BREESCHOTEN, T.; BOCAK, L. & VOGLER, A.P.

The contribution of mitochondrial metagenomics to largescale data mining and phylogenetic analysis of Coleoptera.

Molecular Phylogenetics and Evolution

128: 1-11

Link

ANDÚJAR, C.; ARRIBAS, P.; GRAY, C.; BRUCE, K.; WOODWARD, G.; YU, D. & VOGLER, A.P.

Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill.

Molecular Ecology

27: 146-166

Link

2017

ANDÚJAR, C.; PÉREZ, S.; ARRIBAS, P.; ZABALLOS, J.; VOGLER, A.P. & RIBERA, I.

Speciation below ground: Tempo and mode of diversification in a radiation of endogean ground beetles.

Molecular Ecology

26: 6053-6070

Link

PALLARÉS, S.; ARRIBAS, P.; BILTON, D.T.; MILLÁN, A.; VELASCO, J. & RIBERA, I.

The chicken or the egg? Adaptation to desiccation and salinity tolerance in a lineage of water beetles.

Molecular Ecology

26: 5614-5628

Link

ANDÚJAR, C.; ARRIBAS, P. & VOGLER, A.P.

Terra incognita of soil biodiversity: unseen invasions under our feet.

Molecular Ecology

26: 3087–3089

Link

ANDÚJAR, C.; ARRIBAS, P.; LINARD, B.; KUNDRATA, R.; BOCAK, L. & VOGLER, A.P.

The mitochondrial genome of Iberobaenia (Coleoptera: Iberobaeniidae): First rearrangement of protein coding genes in the beetles.

Mitochondrial DNA

28(2): 156-158

Link

PALLARÉS, S.; BOTELLA-CRUZ, M.; ARRIBAS, P.; MILLÁN, A. & VELASCO, J.

Aquatic insects in a multistress environment: cross-tolerance to salinity and desiccation.

Journal of Experimental Biology

220: 1277-1286

Link

LINARD, B.; ARRIBAS, P.; ANDÚJAR, C.; CRAMPTON-PLATT, A.; VOGLER, A.P.

The mitogenome of Hydropsyche pellucidula (Hydropsychidae): first gene arrangement in the insect order Trichoptera.

Mitochondrial DNA

28(1): 71-72

Link

2016

ZABALLOS JP, ANDÚJAR C, PÉREZ-GONZÁLEZ S.

A small carabid for a huge entomologist: Typhlocharis amara, a new species dedicated to Dr. Fritz Hieke.

Entomologische Blätter und Coleoptera.

112: 465-73

Link

ANDÚJAR, C., FAILLE, A., PÉREZ, S. ZABALLOS, J., VOGLER, A.P., RIBERA, I.

Gondwanian relicts and oceanic dispersal in a cosmopolitan radiation of euedaphic ground beetles.

Molecular Phylogenetics and Evolution

24, 3603-3617

Link

BOCAK, L., KUNDRATA, R., ANDÚJAR, C., VOGLER, A.P.

The discovery of Iberobaeniidae (Coleoptera: Elateroidea), a new family of beetles from Spain with immatures detected by environmental DNA sequencing.

Proceedings of the Royal Society of London B

283: 20152350

Link

LINARD, B.*; ARRIBAS, P.*; ANDÚJAR, C.; CRAMPTON-PLATT, A.; VOGLER, A.P.

Lessons from genome skimming of arthropod-preserving ethanol.

Molecular Ecology Resources

16(6): 1365-1377

Link

*equal contribution

PALLARÉS, S.; VELASCO, J.; MILLÁN, A.; BILTON, D.T. & ARRIBAS, P.

Aquatic insects dealing with dehydration: do desiccation resistance traits differ in species with contrasting habitat preferences?

PeerJ

4: e2382

Link

ARRIBAS, P.; ANDÚJAR, C.; HOPKINS, K.; SHEPHERD, M. & VOGLER, A.P.

Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil mesofauna of the soil.

Methods in Ecology and Evolution

7(1): 1071-1081

Link

2015

ARRIBAS, P.; ABELLÁN, P.; VELASCO, J. & MILLÁN, A.

Evolutionary ecology, biogeography and conservation of water beetles in Mediterranean saline ecosystems.

Limnetica

34(2): 481-494

Link

ANDÚJAR, C.; ARRIBAS, P.; RUZICKA, F.; CRAMPTON-PLATT, A.; TIMMERMANS M.J., A. & VOGLER, A.P.

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics.

Molecular Ecology

24(14): 3603-3617

Link

*Perspective on our paper published in same Molecular Ecology issue*

PALLARÉS, S.; ARRIBAS, P.; BILTON, D.T.; MILLÁN, A. & VELASCO, J.

The comparative osmoregulatory ability of two water beetle genera whose species span the fresh-hypersaline gradient in inland waters (Coleoptera: Dytiscidae, Hydrophilidae).

PloS ONE

10(4): e0124299

Link

2014

FAILLE, A., ANDÚJAR, C., FADRIQUE, F., RIBERA, I.

Late Miocene origin of aIbero-Maghrebian clade of ground beetles with multiple colonisations of the subterranean environment.

Journal of Biogeography

41: 1979–1990

Link

ANDÚJAR, C., SORIA-CARRASCO, V., SERRANO, J., GÓMEZ-ZURITA, J.

Congruence test of molecular clock calibration hypotheses based on Bayes factor comparisons.

Methods in Ecology and Evolution

5: 226-242

Link

ANDÚJAR, C.; ARRIBAS, P.; RUIZ, C.; SERRANO, J.; GÓMEZ-ZURITA, J.

Integration of conflict into Integrative Taxonomy: Fitting hybridization in the delimitation of species in Mesocarabus (Coleoptera: Carabidae).

Molecular Ecology

23(17): 4344-4361

Link

*Perspective on our paper published in same Molecular Ecology issue*

ARRIBAS, P.; ANDÚJAR, C.; ABELLÁN, P.; VELASCO, J.; MILLÁN, A. & RIBERA, I.

Tempo and mode of the multiple origins of salinity tolerance in a water beetle lineage.

Molecular Ecology

23(2): 360-373

Link

2013

CÉSPEDES, V.; PALLARÉS, S.; ARRIBAS, P.; MILLÁN, A. & VELASCO, J.

Water beetle tolerance to salinity and anionic composition and its relationship to habitat occupancy.

Journal of Insect Physiology

59(10): 1076-1084

Link

ARRIBAS, P.; ANDÚJAR, C.; SÁNCHEZ-FERNÁNDEZ, D.; ABELLÁN, P. & MILLÁN, A.

Integrative taxonomy and conservation of cryptic beetles in the Mediterranean region (Hydrophilidae).

Zoologica Scripta

42(2): 182-200

Link

Publications before 2013 and other (non-JCR) publications can be found in Paula Arribas and Carmelo Andújar CVs